The expression of many, maybe most of the "cancer genes" is associated with proliferation. There are not many genes that are upregulated in cancer tissue compared to normal, but is not associated with proliferation. This is a nice paper on the topic: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5748209/
The "general level of proliferation" in a sample can be estimated using RNASeq, these estimations usually referred as proliferation indexes. The proliferation index was determined using two methods:
- Venet D, Dumont JE, Detours V. Most random gene expression signatures are significantly associated with breast cancer outcome. PLoS Comput Biol. 2011; 7. doi: 10.1371/journal.pcbi.1002240.
- Marie Locard-Paulet,Oana Palasca,Lars Juhl Jensen, Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies
Furthermore, the correlation with cell cycle-related genes is also represented in this report.
knitr::opts_chunk$set(echo=FALSE)
ACC
Venet PI ,ACC

Lars PI ,ACC

Cell cycle genes - Phase S ,ACC


BLCA
Venet PI ,BLCA

Lars PI ,BLCA

Cell cycle genes - Phase S ,BLCA


BRCA
Venet PI ,BRCA

Lars PI ,BRCA

Cell cycle genes - Phase S ,BRCA


CESC
Venet PI ,CESC

Lars PI ,CESC

Cell cycle genes - Phase S ,CESC


CHOL
Venet PI ,CHOL

Lars PI ,CHOL

Cell cycle genes - Phase S ,CHOL


COAD
Venet PI ,COAD

Lars PI ,COAD

Cell cycle genes - Phase S ,COAD


DLBC
Venet PI ,DLBC

Lars PI ,DLBC

Cell cycle genes - Phase S ,DLBC


ESCA
Venet PI ,ESCA

Lars PI ,ESCA

Cell cycle genes - Phase S ,ESCA


GBM
Venet PI ,GBM

Lars PI ,GBM

Cell cycle genes - Phase S ,GBM


HNSC
Venet PI ,HNSC

Lars PI ,HNSC

Cell cycle genes - Phase S ,HNSC


KICH
Venet PI ,KICH

Lars PI ,KICH

Cell cycle genes - Phase S ,KICH


KIRC
Venet PI ,KIRC

Lars PI ,KIRC

Cell cycle genes - Phase S ,KIRC


KIRP
Venet PI ,KIRP

Lars PI ,KIRP

Cell cycle genes - Phase S ,KIRP


LGG
Venet PI ,LGG

Lars PI ,LGG

Cell cycle genes - Phase S ,LGG


LIHC
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Lars PI ,LIHC

Cell cycle genes - Phase S ,LIHC


LUAD
Venet PI ,LUAD

Lars PI ,LUAD

Cell cycle genes - Phase S ,LUAD


LUSC
Venet PI ,LUSC

Lars PI ,LUSC

Cell cycle genes - Phase S ,LUSC


MESO
Venet PI ,MESO

Lars PI ,MESO

Cell cycle genes - Phase S ,MESO


OV
Venet PI ,OV

Lars PI ,OV

Cell cycle genes - Phase S ,OV


PAAD
Venet PI ,PAAD

Lars PI ,PAAD

Cell cycle genes - Phase S ,PAAD


PCPG
Venet PI ,PCPG

Lars PI ,PCPG

Cell cycle genes - Phase S ,PCPG


PRAD
Venet PI ,PRAD

Lars PI ,PRAD

Cell cycle genes - Phase S ,PRAD


READ
Venet PI ,READ

Lars PI ,READ

Cell cycle genes - Phase S ,READ


SARC
Venet PI ,SARC

Lars PI ,SARC

Cell cycle genes - Phase S ,SARC


SKCM
Venet PI ,SKCM

Lars PI ,SKCM

Cell cycle genes - Phase S ,SKCM


STAD
Venet PI ,STAD

Lars PI ,STAD

Cell cycle genes - Phase S ,STAD


THCA
Venet PI ,THCA

Lars PI ,THCA

Cell cycle genes - Phase S ,THCA


THYM
Venet PI ,THYM

Lars PI ,THYM

Cell cycle genes - Phase S ,THYM


UCEC
Venet PI ,UCEC

Lars PI ,UCEC

Cell cycle genes - Phase S ,UCEC


UCS
Venet PI ,UCS

Lars PI ,UCS

Cell cycle genes - Phase S ,UCS

